PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016489818.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 448aa    MW: 49605.4 Da    PI: 8.5658
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016489818.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.82.7e-15324405179
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 
                     f+kvl+ sd+++ grlvlpk +ae++   +++ e+  ++++d +g++W++++++  +++s++yvl+ G     +  +L++gD+
  XP_016489818.1 324 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSEGLPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDT 405
                     99**************************666667778***************9989999999***9.***************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.27E-16321405IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.9E-24321405IPR015300DNA-binding pseudobarrel domain
CDDcd100171.61E-19322405No hitNo description
PROSITE profilePS508638.868324427IPR003340B3 DNA binding domain
SMARTSM010196.4E-13324417IPR003340B3 DNA binding domain
PfamPF023621.2E-12324405IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MGSMICMNEL CRATTSSEWK KGWSLKSGGF AKLCYNCGSA FENLVFCETF HSEESGWREC  60
KTCRKLIHCG CIASKYLYEY MDYGGVACIN CASQLDGHSI RPIQIPGDDL PNGTLGTKAT  120
QPLGVENKMD ENNFDKRRVM RLSKPVETSE SGQLFQTQKN DIKQETMVPI GNVSTCFSNL  180
NQQPVGAASL FGKPDNDRQS QGVKDMYESI NQPSLNFSLS TLVGASSSAQ PFPGGDVEGR  240
EQSKSSPFQL GQRTRHILPK PPKPSPNSGS ESNKAMTSQT RVARPPAEGR GGRNQLLPRY  300
WPRITDQELQ QISGDLKSTI VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPINQSEGLP  360
IRIQDIKGKE WTFQFRFWPN NNSRMYVLEG VTPCIQNMQL QAGDTGNSSF FLLMKKNLHM  420
TNPVCSNCKT FSCMFPSVIS FKFNGNGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016489818.10.0PREDICTED: B3 domain-containing protein Os07g0679700-like, partial
SwissprotQ6Z3U31e-119Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLK4CAB10.0K4CAB1_SOLLC; Uncharacterized protein
STRINGSolyc06g082520.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-111HSI2-like 1